Selfing Tree

Inference of Matrilineal Pedigrees with Partial Selfing

The software program IMPPS is available to download. Note that this program is still in testing and that the usual MCMC caveats apply. The program is not particularly user friendly and a limited manual for impps is in the file impps.pdf

Unix Systems

Software is C++ source code in the form of zipped tar files. Download source (below). Use
gunzip -zxf impps.tar.gz, change to the program directory impps/src and type make to compile the program.

Note that the Gnu Scientific Library (gsl) is required for the compilation of impps. This is available here and binaries are available for the major linux distributions and cygwin/mingw32.

Typing impps --help gives information on the options available.
Windows (2000/NT/XP)

The programs are distributed as a zip file wimpps.zip containing the executable files and example data files. Note that the current version of IMPS is command line driven and must be opened using a command shell.
To start this use start->run and type cmd in the box to bring up a shell. Then go to the directory containing impps.exe and type impps.exe --help for available options.

impps.tar.gz (unix/linux/cygwin)
wimpps.zip (MS windows)
manual
Links

PartitionView - allows visualisation of output.


Written by Ian Wilson, last modified 6/11/2006.